Healthy Spaghetti Squash Au Gratin
If you’re looking for a dish that brings comfort without the guilt, this Healthy Spaghetti Squash Au Gratin is just what you need. It’s one of those recipes that feels indulgent while being packed with wholesome ingredients. The combination of roasted spaghetti squash, savory sautéed onions, and creamy Greek yogurt creates a delightful texture and flavor that’s hard to resist. Whether it’s a busy weeknight dinner or a special family gathering, this dish fits right in with any occasion.
What makes this recipe even more special is how easy it is to whip up! You’ll feel like a kitchen pro as you layer in the flavors and watch it bake to bubbly perfection. Plus, it’s naturally low-carb and gluten-free, making it a wonderful option for anyone looking to enjoy a healthier meal without sacrificing taste!
Why You’ll Love This Recipe
- Quick Preparation: With just 15 minutes of prep time, you can have this dish ready in no time!
- Family-Friendly: Kids love the cheesy goodness, making it perfect for the whole family.
- Make-Ahead Convenience: Prep it in advance and pop it in the oven when you’re ready to eat.
- Endless Flavor: The combination of cheese and spices gives you that rich, comforting taste you crave.

Ingredients You’ll Need
You won’t believe how simple these ingredients are! They come together beautifully to create a dish that’s both nourishing and satisfying. Here’s what you’ll need:
For the Main Dish
- 1 medium spaghetti squash
- 1 tbsp olive oil
- ½ cup diced onion
- 2 cloves garlic (minced)
- ½ cup plain Greek yogurt (or sour cream)
- 1½ cups shredded sharp cheddar cheese (divided)
- ¼ tsp salt
- ¼ tsp black pepper
- Optional: ¼ tsp paprika or dried thyme
Variations
One of the best things about this Healthy Spaghetti Squash Au Gratin is its flexibility! You can easily adapt it to suit your tastes or what you have on hand.
- Add Extra Veggies: Toss in some spinach or kale for an added nutrient boost.
- Make It Spicy: Sprinkle in some red pepper flakes if you like a little heat.
- Cheese Swap: Try using different cheeses like mozzarella or pepper jack for a twist on flavor.
- Herb Infusion: Experiment with fresh herbs like basil or parsley for added freshness.
How to Make Healthy Spaghetti Squash Au Gratin
Step 1: Roast the Spaghetti Squash
Preheat your oven to 400°F (205°C). Slice the spaghetti squash in half lengthwise and scoop out the seeds. Brushing the cut sides with olive oil not only enhances flavor but also helps achieve that lovely roasted texture. Place them face-down on a baking sheet and roast for 35–40 minutes until tender.
Step 2: Sauté Onions and Garlic
While your squash is roasting, heat a skillet over medium heat. Sauté the diced onions in a bit of olive oil until they become soft and translucent—this usually takes about 5 minutes. Adding minced garlic for the last minute will fill your kitchen with an irresistible aroma!
Step 3: Shred the Squash
Once your squash has cooled enough to handle, grab a fork and shred it into noodle-like strands. This step is crucial as it gives our au gratin its beloved texture.
Step 4: Combine Ingredients
In a large bowl, mix those freshly shredded squash strands with your sautéed onions and garlic, Greek yogurt, 1 cup of shredded cheese, salt, black pepper, and optional spices. This blend creates a creamy mixture that’s going to be deliciously comforting!
Step 5: Bake It Up
Transfer your mixture into a greased casserole dish and top it off with the remaining cheese. Bake at 375°F for about 20–25 minutes until everything is hot and bubbly with that gorgeous golden top we all love.
Step 6: Serve and Enjoy
Let your Healthy Spaghetti Squash Au Gratin cool slightly before serving. This dish works perfectly as either a side or light main course—everyone will be asking for seconds! Enjoy every bite knowing you’re treating yourself well while savoring something truly delicious!
Pro Tips for Making Healthy Spaghetti Squash Au Gratin
Creating a delicious and satisfying Healthy Spaghetti Squash Au Gratin is all about the little details. Here are some pro tips to ensure your dish turns out perfect every time!
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Choose the right squash: Opt for a medium-sized spaghetti squash that feels heavy for its size. This usually indicates it’s fresh and has plenty of meat inside.
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Don’t rush the roasting: Roasting the spaghetti squash face-down allows it to steam in its own moisture, making it tender and easy to shred. Trust the process; 35-40 minutes will yield the best texture!
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Customize your cheese: While sharp cheddar gives a great flavor kick, feel free to mix in other cheeses like mozzarella or gouda for extra creaminess. Just remember to keep your total cheese amount consistent.
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Season generously: Don’t be shy with salt, pepper, and herbs! These seasonings can enhance the flavor of your dish significantly, so taste as you go and adjust accordingly.
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Let it cool before serving: Allowing your au gratin to rest for a few minutes after baking helps it set up nicely, making serving easier and preventing it from falling apart.
How to Serve Healthy Spaghetti Squash Au Gratin
Serving this Healthy Spaghetti Squash Au Gratin is a chance to get creative! Whether you’re dressing it up for a special occasion or keeping it casual for a weeknight dinner, here are some ideas:
Garnishes
- Chopped fresh herbs: Sprinkle with parsley or chives for a pop of color and freshness that brightens up the dish.
- Crushed red pepper flakes: If you enjoy a little heat, add these flakes on top just before serving for an extra kick.
Side Dishes
- Simple Green Salad: A light salad with mixed greens, cherry tomatoes, and a lemon vinaigrette provides a refreshing contrast to the rich flavors of the au gratin.
- Roasted Vegetables: Pair with seasonal roasted veggies like Brussels sprouts or carrots tossed in olive oil and seasoning. The caramelization adds depth to your meal.
- Quinoa Pilaf: Serve alongside a fluffy quinoa pilaf mixed with fresh herbs and lemon zest. It complements the cheesy squash while adding protein!
- Garlic Bread: For those indulgent nights, homemade or store-bought garlic bread can be an irresistible side that balances out this healthy dish.
With these tips and serving suggestions, your Healthy Spaghetti Squash Au Gratin will not only taste amazing but also impress anyone sitting at your table! Enjoy your cozy meal!

Make Ahead and Storage
This Healthy Spaghetti Squash Au Gratin is perfect for meal prep! You can easily make it ahead of time, store it, and enjoy it throughout the week. Here’s how to properly store and reheat your delicious dish.
Storing Leftovers
- Allow the dish to cool completely before storing.
- Transfer leftovers to an airtight container.
- Store in the refrigerator for up to 4 days.
Freezing
- Let the dish cool completely before freezing.
- Portion into freezer-safe containers or wrap tightly in plastic wrap.
- Freeze for up to 3 months for best quality.
Reheating
- For refrigerator storage, preheat the oven to 350°F (175°C).
- Place the dish in an oven-safe container and cover with foil.
- Bake for 20–25 minutes or until heated through.
- For frozen portions, allow them to thaw overnight in the fridge before reheating.
FAQs
Here are some common questions about this delightful recipe:
Can I make Healthy Spaghetti Squash Au Gratin in advance?
Yes! This dish is great for meal prep. You can prepare it a day ahead and simply reheat when you’re ready to serve.
What can I substitute for Greek yogurt in Healthy Spaghetti Squash Au Gratin?
You can use sour cream or a dairy-free yogurt alternative if preferred. Both options will give you that creamy texture you want!
How long does Healthy Spaghetti Squash Au Gratin last in the fridge?
It will keep well in the refrigerator for up to 4 days when stored properly in an airtight container.
Can I add other vegetables to Healthy Spaghetti Squash Au Gratin?
Absolutely! Feel free to toss in other veggies like spinach, bell peppers, or mushrooms to enhance the flavor and nutrition.
Is this recipe suitable for gluten-free diets?
Yes! This Healthy Spaghetti Squash Au Gratin is naturally gluten-free because it uses spaghetti squash instead of traditional pasta.
Final Thoughts
I hope this Healthy Spaghetti Squash Au Gratin becomes a beloved recipe in your home as it has in mine! It’s a comforting yet healthy twist on classic gratin that’s sure to impress family and friends alike. Enjoy making this dish, and don’t hesitate to share your experience or variations! Happy cooking!
Healthy Spaghetti Squash Au Gratin
Savor the delightful flavors of Healthy Spaghetti Squash Au Gratin, a comforting dish that feels indulgent yet is packed with wholesome ingredients. This recipe combines roasted spaghetti squash with savory sautéed onions and creamy Greek yogurt, resulting in a dish that’s both nourishing and satisfying. Perfect for busy weeknights or family gatherings, this au gratin is naturally low-carb and gluten-free, ensuring you can enjoy every bite guilt-free. With its cheesy goodness and endless flavor possibilities, it’s sure to become a favorite at your table.
- Prep Time: 15 minutes
- Cook Time: 55 minutes
- Total Time: 1 hour 10 minutes
- Yield: Serves approximately 6 portions 1x
- Category: Main
- Method: Baking
- Cuisine: American
Ingredients
- 1 medium spaghetti squash
- 1 tbsp olive oil
- ½ cup diced onion
- 2 cloves garlic (minced)
- ½ cup plain Greek yogurt
- 1½ cups shredded sharp cheddar cheese (divided)
- ¼ tsp salt
- ¼ tsp black pepper
- Optional: ¼ tsp paprika or dried thyme
Instructions
- Preheat oven to 400°F (205°C). Halve the spaghetti squash lengthwise, scoop out seeds, brush cut sides with olive oil, and place face-down on a baking sheet. Roast for 35–40 minutes until tender.
- In a skillet over medium heat, sauté onions in olive oil until soft. Add minced garlic for the last minute of cooking.
- Once the squash cools slightly, use a fork to shred it into strands.
- Combine shredded squash with sautéed onions, garlic, Greek yogurt, 1 cup cheese, salt, and pepper in a bowl.
- Transfer the mixture to a greased casserole dish, top with remaining cheese, and bake at 375°F for 20–25 minutes until golden and bubbly.
- Let cool slightly before serving.
Nutrition
- Serving Size: 1 cup (240g)
- Calories: 320
- Sugar: 3g
- Sodium: 450mg
- Fat: 18g
- Saturated Fat: 10g
- Unsaturated Fat: 8g
- Trans Fat: 0g
- Carbohydrates: 25g
- Fiber: 4g
- Protein: 15g
- Cholesterol: 45mg
